-
Q. X.
Yang, Y. X. Wang, Y. Zhang, F. C. Li, W. Q. Xia, Y.
Zhou, Y. Q. Qiu, H. L. Li, F. Zhu*.
NOREVA: enhanced normalization and evaluation of
time-course and multi-class metabolomic data.
Nucleic Acids Research
(impact factor of the publication year:
16.9,
生物一区
TOP 期刊). 48(W1): 436-448 (2020). PMID: 32324219.
ESI Highly Cited Paper:
-
The Percentile in Subject Area
shown in
InCites™
was 0.87%
in 2023.
-
The Percentile in Subject Area
shown in
InCites™
was 1.60%
in 2022.
Media Coverage & News Report
:
-
X. N. Sun,
Y. T. Zhang, H. Y. Li, Y. Zhou, S. Y. Shi, Z. Chen, X.
He, H. Y. Zhang, F. C. Li, J. Y. Yin, M. J. Mou, Y. Z.
Wang, Y. Q. Qiu, F. Zhu*.
DRESIS: the first comprehensive landscape of drug
resistance information.
Nucleic Acids Research
(impact factor of the publication year:
19.2,
生物一区
TOP 期刊). 51(D1): 1263-1275 (2023). PMID: 36243960.
Media Coverage & News Report:
-
Antpedia. Apr 17th, 2023.
-
AutophagyAdvances. Mar 3th, 2023.
-
bilibili. Fer 3th, 2023.
-
CPS@ZJU. Mar 4th, 2023.
-
CSDN. Apr 12th, 2023.
-
eBiotrade. Mar 3th, 2023.
-
iBioinformatics. Apr 14th, 2023.
-
JinriArticle. Mar 3th, 2023.
-
SciRes. Apr 15th, 2023.
-
Sohu. Apr 25th, 2023.
-
Zhihu. Apr 25th, 2023.
-
J. Y. Yin,
F. C. Li, Y. Zhou, M. J. Mou, Y. J. Lu, K. L. Chen, J.
Xue, Y. C. Luo, J. B. Fu, X. He, J. Q. Gao, S. Zeng*, L.
S. Yu*, F. Zhu*.
INTEDE: interactome of drug-metabolizing enzymes.
Nucleic Acids Research
(impact factor of the publication year:
19.2,
生物一区
TOP 期刊). 49(D1): 1233-1243 (2021). PMID: 33045737.
ESI Highly Cited Paper:
-
The Percentile in Subject Area
shown in
InCites™
was 1.01%
in 2023.
-
The Percentile in Subject Area
shown in
InCites™
was 1.12%
in 2022.
Media Coverage & News Report
:
-
B. Li, J.
Tang, Q. X. Yang, S. Li, X. J. Cui, Y. H. Li, Y. Z.
Chen, W. W. Xue, X. F. Li, F. Zhu*.
NOREVA: normalization and evaluation of MS-based
metabolomics data.
Nucleic Acids Research
(impact factor of the publication year:
10.2,
生物一区
TOP 期刊). 45(W1): 162-170 (2017). PMID: 28525573.
ESI Highly Cited Paper:
-
The Percentile in Subject Area
shown in
InCites™
was 0.60%
in 2023.
-
The Percentile in Subject Area
shown in
InCites™
was 0.77%
in 2022.
-
The Percentile in Subject Area
shown in
InCites™
was 0.71%
in 2021.
-
The Percentile in Subject Area
shown in
InCites™
was 0.75%
in 2020.
-
The Percentile in Subject Area
shown in
InCites™
was 1.27%
in 2019.
-
The Percentile in Subject Area
shown in
InCites™
was 2.98%
in 2018.
Highlights by Experts in Subject
Area:
-
Introduced by
OMICTOOLS
as "provided valuable guidance to the
selection of suitable algorithm in
metabolomics".
-
Discussed in
StackExchange
as "works fine" and "corrections
for batches without QC options".
-
J. Y. Yin,
W. Sun, F. C. Li, J. J. Hong, X. X. Li, Y. Zhou, Y. J.
Lu, M. Z. Liu, X. Zhang, N. Chen, X. P. Jin, J. Xue, S.
Zeng*, L. S. Yu*, F. Zhu*. VARIDT
1.0: variability of drug transporter database.
Nucleic Acids Research
(impact factor of the publication year:
16.9,
生物一区
TOP 期刊). 48(D1): 1042-1050 (2020). PMID: 31495872.
ESI Highly Cited Paper:
-
The Percentile in Subject Area
shown in
InCites™
was 0.81%
in 2023.
-
The Percentile in Subject Area
shown in
InCites™
was 0.96%
in 2022.
-
The Percentile in Subject Area
shown in
InCites™
was 0.33%
in 2021.
Media Coverage & News Report
:
-
J. Tang,
J. B. Fu, Y. X. Wang, B. Li, Y. H. Li, Q. X. Yang, X. J.
Cui, J. J. Hong, X. F. Li, Y. Z. Chen, W. W. Xue, F.
Zhu*.
ANPELA: analysis and performance-assessment of the
label-free quantification workflow for metaproteomic
studies.
Briefings in Bioinformatics
(impact factor of the publication year:
11.6,
生物一区
TOP 期刊). 21(2): 621-636 (2020). PMID: 30649171.
ESI Highly Cited Paper:
-
The Percentile in Subject Area
shown in
InCites™
was 0.30%
in 2023.
-
The Percentile in Subject Area
shown in
InCites™
was 0.20%
in 2022.
-
The Percentile in Subject Area
shown in
InCites™
was 0.05%
in 2021.
-
F. C. Li,
Y. Zhou, Y. Zhang, J. Y. Yin, Y. Q. Qiu, J. Q. Gao,
F. Zhu*.
POSREG: proteomic signature discovered by simultaneously
optimizing its reproducibility and generalizability.
Briefings in Bioinformatics
(impact factor of the publication year:
13.9,
生物一区
TOP 期刊). 23(2): bbac040 (2022). PMID: 35183059.
ESI Highly Cited Paper:
-
The Percentile in Subject Area
shown in
InCites™
was
0.06% in 2023.
-
S. Zhang,
K. Amahong, C. Y. Zhang, F. C. Li, J. Q. Gao, Y. Q.
Qiu*, F. Zhu*.
RNA-RNA interactions between SARS-CoV-2 and host benefit
viral development and evolution during COVID-19
infection.
Briefings in Bioinformatics
(impact factor of the publication year:
13.9,
生物一区
TOP 期刊). 23(1): bbab397 (2022). PMID: 34585235.
ESI Highly Cited Paper:
-
The Percentile in Subject Area
shown in
InCites™
was
0.12% in 2023.
-
J. J.
Hong, Y. C. Luo, Y. Zhang, J. B. Ying, W. W. Xue, T.
Xie, L. Tao*, F. Zhu*.
Protein functional annotation of simultaneously improved
stability, accuracy and false discovery rate achieved by
a sequence-based deep learning.
Briefings in Bioinformatics
(impact factor of the publication year:
11.6,
生物一区
TOP 期刊). 21(4): 1437-1447 (2020). PMID: 31504150.
ESI Highly Cited Paper:
-
The Percentile in Subject Area
shown in
InCites™
was 0.58%
in 2023.
-
The Percentile in Subject Area
shown in
InCites™
was 0.94%
in 2022.
-
Q. X.
Yang, Y. X. Wang, F. C. Li, S. Zhang, Y. C. Luo, Y. Li,
J. Tang, B. Li, Y. Z. Chen, W. W. Xue, F. Zhu*.
Identification of the gene signature reflecting
schizophrenia's etiology by constructing artificial
intelligence-based method of enhanced reproducibility.
CNS
Neuroscience & Therapeutics
(impact factor of the publication year:
7.0,
医学一区
TOP 期刊). 25(9): 1054-1063 (2019). PMID: 31350824.
Cover Article:
-
The
Cover Article
of CNS Neurosci Ther 2019 25(9), Download
the Cover
.
-
Z. J. Han,
W. W. Xue, L. Tao, F. Zhu*.
Identification of novel immune-relevant drug target
genes for alzheimer's disease by combining ontology
inference with network analysis.
CNS
Neuroscience & Therapeutics
(impact factor of the publication year:
7.0,
医学一区
TOP 期刊). 24(12): 1253-1263 (2018). PMID: 30106219.
Honors and Awards:
-
Wiley Top Cited Paper Award (2020).
Cover Article:
-
The
Cover Article
of CNS Neurosci Ther 2018 24(12),
Download the Cover
.
-
J. Tang,
J. B. Fu, Y. X. Wang, Y. C. Luo, Q. X. Yang, B. Li, G.
Tu, J. J. Hong, X. J. Cui, Y. Z. Chen, L. X. Yao, W. W.
Xue, F. Zhu*.
Simultaneous improvement in the precision, accuracy and
robustness of label-free proteome quantification by
optimizing data manipulation chains.
Molecular & Cellular Proteomics
(impact factor of the publication year:
7.4,
生物一区
TOP 期刊). 18(8): 1683-1699 (2019). PMID: 31097671.
ESI Highly Cited Paper:
-
The Percentile in Subject Area
shown in
InCites™
was 0.87%
in 2023.
-
The Percentile in Subject Area
shown in
InCites™
was 1.12%
in 2022.
-
The Percentile in Subject Area
shown in
InCites™
was 0.81%
in 2021.
-
The Percentile in Subject Area
shown in
InCites™
was 0.57%
in 2020.
-
F. C. Li,
Y. Zhou, X. Y. Zhang, J. Tang, Q. X. Yang, Y. Zhang, Y.
C. Luo, J. Hu*, W. W. Xue, Y. Q. Qiu, Q. J. He, B. Yang,
F. Zhu*.
SSizer: determining the sample sufficiency for
comparative biological study.
Journal of Molecular Biology
(impact factor of the publication year:
5.1,
生物二区
TOP 期刊). 432(11): 3411-3421 (2020). PMID:
32044343.
ESI Highly Cited Paper:
-
The Percentile in Subject Area
shown in
InCites™
was 2.93%
in 2023.
-
W. W. Xue,
F. Y. Yang, P. P. Wang, G. X. Zheng, Y. Z. Chen, X. J.
Yao, F. Zhu*. What
contributes to serotonin-norepinephrine reuptake
inhibitors' dual-targeting mechanism? The key role of
transmembrane domain 6 in human serotonin and
norepinephrine transporters revealed by molecular
dynamics simulation.
ACS
Chemical Neuroscience
(impact factor of the publication year:
4.2,
化学二区
TOP 期刊). 9(5): 1128-1140 (2018). PMID: 29300091.
ESI Highly Cited Paper:
-
The Percentile in Subject Area
shown in
InCites™
was
0.11% in 2023.
-
The Percentile in Subject Area
shown in
InCites™
was
0.18% in 2022.
-
The Percentile in Subject Area
shown in
InCites™
was
0.14% in 2021.
-
The Percentile in Subject Area
shown in
InCites™
was
0.21% in 2020.
-
The Percentile in Subject Area
shown in
InCites™
was
0.29% in 2019.
-
Y. Zhang,
J. B. Ying, J. J. Hong, F. C. Li, T. T. Fu, F. Y. Yang,
G. X. Zheng, X. J. Yao, Y. Lou, Y. Q. Qiu, W. W. Xue*,
F. Zhu*. How
does chirality determine the selective inhibition of
histone deacetylase 6? A lesson from Trichostatin A
enantiomers based on molecular dynamics.
ACS
Chemical Neuroscience
(impact factor of the publication year:
4.2,
化学二区
TOP 期刊). 10(5): 2467-2480 (2019). PMID: 30784262.
ESI Highly Cited Paper:
-
The Percentile in Subject Area
shown in
InCites™
was 0.48%
in 2023.
-
The Percentile in Subject Area
shown in
InCites™
was 1.85%
in 2022.
-
The Percentile in Subject Area
shown in
InCites™
was 1.19%
in 2021.
-
The Percentile in Subject Area
shown in
InCites™
was 0.74%
in 2020.
Cover Article:
-
The
Cover Article
of ACS Chem Neurosci 2019 10(5),
Download the Cover
.
-
W. W. Xue,
T. T. Fu, S. Z. Deng, F. Y. Yang, J. Y. Yang, F.
Zhu*.
Molecular mechanism for the allosteric inhibition of the
human serotonin transporter by antidepressant
escitalopram.
ACS
Chemical Neuroscience
(impact factor of the publication year:
5.8,
医学二区期刊). 13(3): 340-351 (2022). PMID: 35041375.
ESI Highly Cited Paper:
-
The Percentile in Subject Area
shown in
InCites™
was
0.05% in 2023.
-
The Percentile in Subject Area
shown in
InCites™
was
0.09% in 2022.
-
Q. X.
Yang, B. Li, S. J. Chen, J. Tang, Y. H. Li, Y. Li, S.
Zhang, C. Shi, Y. Zhang, M. J. Mou, W. W. Xue*, F.
Zhu*.
MMEASE: online meta-analysis of metabolomic data by
enhanced metabolite annotation, marker selection and
enrichment analysis.
Journal of Proteomics
(impact factor of the publication year:
4.0,
生物二区期刊). 232: 104023 (2021). PMID: 33130111.
ESI Highly Cited Paper:
-
The Percentile in Subject Area
shown in
InCites™
was 0.69%
in 2023.
-
The Percentile in Subject Area
shown in
InCites™
was 2.51%
in 2022.
-
Y.
X. Wang, Z. Chen, Z. Q. Pan, S. J. Huang, J. Liu, W. Q. Xia,
H. N. Zhang, M. Y. Zheng, H. L. Li, T. J. Hou, F. Zhu*.
RNAincoder: a deep learning-based encoder for RNA and
RNA-associated interaction.
Nucleic
Acids Research
(impact
factor of the publication year: 19.2,
生物一区 TOP
期刊). 51(W1): 509-519 (2023). PMID: 37166951.
-
Y. Zhou,
Y. T. Zhang, D. H. Zhao, X. Y. Yu, X. Y. Shen, Y. Zhou,
S. S. Wang, Y. Q. Qiu, Y. Z. Chen*, F. Zhu*. TTD:
Therapeutic Target Database describing target
druggability information.
Nucleic Acids Research
(impact factor of the publication year:
19.2,
生物二区
TOP 期刊). 52(D1): 1465-1477 (2024). PMID: 37713619.
-
L. T.
Shen, X. N. Sun, Z. Chen, Y. Guo, Z. Y. Shen, Y. Song,
W. X. Xin, H. Y. Ding, X. Y. Ma, W. B. Xu, W. Y. Zhou,
J. X. Che, L. L. Tan, L. S. Chen, S. Q. Chen, X.
W. Dong*, L. Fang*, F. Zhu*. ADCdb:
the database of antibody-drug conjugates.
Nucleic Acids Research
(impact factor of the publication year:
19.2,
生物二区
TOP 期刊). 52(D1): 1097-1109 (2024). PMID: 37831118.
-
X.
C. Lian, Y. T. Zhang, Y. Zhou, X. N. Sun, S. J.
Huang, H. B. Dai*, L. Y. Han*, F. Zhu*.
SingPro: a knowledge base providing single-cell
proteomic data.
Nucleic Acids Research
(impact factor of the publication year:
19.2,
生物二区
TOP 期刊). 52(D1): 552-561 (2024). PMID: 37819028.
-
M. K. Lu,
J. Y. Yin, Q. Zhu, G. L. Lin, M. J. Mou, F. Y. Liu, Z.
Q. Pan, N. X. You, X. C. Lian, F. C. Li, H. N. Zhang, L.
Y. Zheng, W. Zhang, H. Y. Zhang, Z. H. Shen, Z. Gu, H.
L. Li*, F. Zhu*.
Artificial intelligence in pharmaceutical sciences.
Engineering
(impact factor of the publication year:
12.8,
工程技术一区
TOP 期刊). 27: 37-69 (2023). PMID:
N.A.
-
L. Y.
Zheng, S. Y. Shi, X. N. Sun, M. K. Lu, Y. Liao, S. S.
Zhu, H. N. Zhang, Z. Q. Pan, P. Fang, Z. Y. Zeng, H. L.
Li, Z. R. Li*, W. W. Xue*, F. Zhu*.
MoDAFold: a strategy for predicting the structure of
missense mutant protein based on AlphaFold2 and
molecular dynamics.
Briefings in Bioinformatics
(impact factor of the publication year:
9.5,
生物二区
TOP 期刊). 25(2): bbae006 (2024). PMID: 38305456.
-
F. C. Li,
J. Y. Yin, M. K. Lu, Q. X. Yang, Z. Y. Zeng, B. Zhang,
Z. R. Li, Y. Q. Qiu, H. B. Dai, Y. Z. Chen*, F.
Zhu*.
ConSIG: consistent discovery of molecular signature from
OMIC data.
Briefings in Bioinformatics
(impact factor of the publication year:
13.9,
生物一区
TOP 期刊). 23(4): bbac253 (2022). PMID: 35758241.
-
J. Y. Yin,
H. Y. Zhang, X. N. Sun, N. X. You, M. J. Mou, M. K. Lu, Z. Q. Pan,
F. C. Li, H. L. Li*, S. Zeng*, F. Zhu*. Decoding drug
response with structurized gridding map-based cell representation.
IEEE Journal of
Biomedical and Health Informatics
(impact factor of the publication year: 7.7,
工程技术一区 TOP 期刊). doi: 10.1109/JBHI.2023.3342280 (2024). PMID: 38090819.
-
Q. X.
Yang, S. M. Chen, W. Y. Jiang, L. Mi, J. R. Liu, Y. Hu,
X. L. Ji*, J. Wang*, F. Zhu*.
MultiClassMetabo: superior classification model
constructed using metabolic markers in multiclass
metabolomics.
Analytical Chemistry
(impact factor of the publication year:
7.4,
化学一区
TOP 期刊). 96(4):1410-1418 (2024). PMID: 38221713.
-
J. Tang, M.
J. Mou, X. Zheng, J. Yan, Z. Q. Pan, J. S. Zhang, B. Li, Q. X. Yang,
Y. X. Wang, Y. Zhang, J. Q. Gao, S. Li*, H. Yang*, F. Zhu*. Strategy for identifying a robust metabolomic signature reveals the altered lipid metabolism in pituitary adenoma.
Analytical
Chemistry
(impact factor of the publication year: 7.4,
化学一区 TOP 期刊). doi: 10.1021/acs.analchem.3c03796 (2024). PMID: 38417094.
-
Y. X.
Wang, F. C. Li, Y, Zhang, Y. Zhou, Y. Tan, Y. Z. Chen*,
F. Zhu*.
Databases for the targeted COVID-19 therapeutics.
British Journal of Pharmacology
(impact factor of the publication year:
7.7,
医学二区
TOP 期刊). 177(21): 4999-5001 (2020). PMID:
32845521.
-
S. Zhang,
K. Amahong, Y. T. Zhang, X. P. Hu, S. J. Huang, M. K.
Lu, Z. Y. Zeng, Z. R. Li, B. Zhang, Y. Q. Qiu, H. B.
Dai, J. Q. Gao, F. Zhu*.
RNAenrich: a web server for non-coding RNA enrichment.
Bioinformatics
(impact factor of the publication year:
6.9,
生物二区
TOP 期刊). 39(7): btad421 (2023). PMID: 37399102.
-
W. Zhang,
M. J. Mou, W. Hu, M. K. Lu, H. Y. Zhang, H. N. Zhang, Y. C. Luo, H.
Q. Xu, L. Tao, H. B. Dai, J. Q. Gao*, F. Zhu*. MOINER: a novel
multi-omics early integration framework for biomedical
classification and biomarker discovery.
Journal of
Chemical Information and Modeling
(impact factor of the publication year: 5.6,
化学二区 TOP 期刊). doi: 10.1021/acs.jcim.4c00013 (2024). PMID: 38373720.
-
T. T. Fu,
G. Tu, M. Ping, G. X. Zheng, F. Y. Yang, J. Y. Yang, Y.
Zhang, X. J. Yao, W. W. Xue*, F. Zhu*.
Subtype selective mechanisms of negative allosteric
modulators binding to group I metabotropic glutamate
receptors.
Acta
Pharmacologica Sinica
(impact factor of the publication year:
6.2,
医学一区
TOP 期刊). 42(8): 1354-1367 (2021). PMID: 33122823.
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