Modelled Stucture
Method:Homology modeling
Teplate PDB:6V4D_A
Identity:99.607%
Minimized Score:-1083.248
Detail: Structure Info
Detail Information of Inter-species Structural Difference
| General Information of Drug Transporter (DT) | |||||
|---|---|---|---|---|---|
| DT ID | DTD0119 Transporter Info | ||||
| Gene Name | SLC17A6 | ||||
| Protein Name | Vesicular glutamate transporter 2 | ||||
| Gene ID | |||||
| UniProt ID | |||||
| 3D Structure |
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| Inter-species Structural Differences (ISD) | |||||
| Mus musculus (Mouse) | |||||
| Gene Name | Slc17a6 | ||||
| UniProt ID | |||||
| UniProt Entry | |||||
| 3D Structure |
Method:Homology modeling Teplate PDB:6V4D_A Sequence Length:511 Identity:99.413% |
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| Click to Save PDB File in TXT Format | |||||
| Performance | Minimized Score | -1087.017 kcal/mol | |||
| Ramachandra Favored | Medium |
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| QMEANBrane Quality | Medium |
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| Ramachandran Plot |
Ramz Z Score:-2.13 ±0.34 Residues in Favored Region:484 Ramachandran favored:95.09% Number of Outliers:1 Ramachandran outliers:0.20% |
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| Click to Save Ramachandran Plot in PNG Format | |||||
| Local Quality |
QMEANBrane Score:0.78 |
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| Click to Save Local Quality Plot in PNG Format | |||||
| Rattus norvegicus (Rat) | |||||
| Gene Name | Slc17a6 | ||||
| UniProt ID | |||||
| UniProt Entry | |||||
| 3D Structure | |||||
| Click to Save PDB File in PDB Format | |||||
| Danio rerio (Zebrafish) | |||||
| Gene Name | slc17a6b | ||||
| UniProt ID | |||||
| UniProt Entry | |||||
| 3D Structure |
Method:Homology modeling Teplate PDB:6V4D_A Sequence Length:517 Identity:88.781% |
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| Click to Save PDB File in TXT Format | |||||
| Performance | Minimized Score | -1067.227 kcal/mol | |||
| Ramachandra Favored | Medium |
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| QMEANBrane Quality | Medium |
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| Ramachandran Plot |
Ramz Z Score:-1.29 ±0.34 Residues in Favored Region:499 Ramachandran favored:96.89% Number of Outliers:2 Ramachandran outliers:0.39% |
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| Click to Save Ramachandran Plot in PNG Format | |||||
| Local Quality |
QMEANBrane Score:0.78 |
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| Click to Save Local Quality Plot in PNG Format | |||||
| References | |||||
| 1 | Ion transport and regulation in a synaptic vesicle glutamate transporter. Science. 2020 May 22;368(6493):893-897. | ||||
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