Modelled Stucture
Method:Homology modeling
Teplate PDB:4XPT_A
Identity:45.996%
Minimized Score:-1424.064
Detail: Structure Info
Detail Information of Inter-species Structural Difference
| General Information of Drug Transporter (DT) | |||||
|---|---|---|---|---|---|
| DT ID | DTD0440 Transporter Info | ||||
| Gene Name | SLC6A1 | ||||
| Protein Name | Sodium- and chloride-dependent GABA transporter 1 | ||||
| Gene ID | |||||
| UniProt ID | |||||
| 3D Structure |
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| Inter-species Structural Differences (ISD) | |||||
| Mus musculus (Mouse) | |||||
| Gene Name | Slc6a1 | ||||
| UniProt ID | |||||
| UniProt Entry | |||||
| 3D Structure |
Method:Homology modeling Teplate PDB:4XPT_A Sequence Length:534 Identity:45.996% |
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| Click to Save PDB File in TXT Format | |||||
| Performance | Minimized Score | -1490.156 kcal/mol | |||
| Ramachandra Favored | Medium |
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| QMEANBrane Quality | High |
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| Ramachandran Plot |
Ramz Z Score:-0.86 ±0.34 Residues in Favored Region:517 Ramachandran favored:97.18% Number of Outliers:3 Ramachandran outliers:0.56% |
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| Click to Save Ramachandran Plot in PNG Format | |||||
| Local Quality |
QMEANBrane Score:0.82 |
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| Click to Save Local Quality Plot in PNG Format | |||||
| Rattus norvegicus (Rat) | |||||
| Gene Name | Slc6a1 | ||||
| UniProt ID | |||||
| UniProt Entry | |||||
| 3D Structure |
Method:Homology modeling Teplate PDB:4XPT_A Sequence Length:534 Identity:45.996% |
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| Click to Save PDB File in TXT Format | |||||
| Performance | Minimized Score | -1442.259 kcal/mol | |||
| Ramachandra Favored | Medium |
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| QMEANBrane Quality | High |
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| Ramachandran Plot |
Ramz Z Score:-1.44 ±0.32 Residues in Favored Region:514 Ramachandran favored:96.62% Number of Outliers:2 Ramachandran outliers:0.38% |
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| Click to Save Ramachandran Plot in PNG Format | |||||
| Local Quality |
QMEANBrane Score:0.82 |
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| Click to Save Local Quality Plot in PNG Format | |||||
| References | |||||
| 1 | Cryo-EM structure of GABA transporter 1 reveals substrate recognition and transport mechanism. Nat Struct Mol Biol. 2023;30(7):1023-1032. | ||||
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