Detail Information of DT Wildtype Structure
General Information of Drug Transporter (DT) | ||||||
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DT ID | DTD0118 Transporter Info | |||||
Gene Name | SLC17A5 | |||||
Transporter Name | Vesicular H(+)/Aspartate-glutamate cotransporter | |||||
Gene ID | ||||||
UniProt ID | ||||||
Modelled Structures of This DT | ||||||
Click to Save PDB File in TXT Format | ||||||
Detail Information of Structural Model | ||||||
Method | Homology modeling | |||||
Template PDB | 6V4D_A | Identity | 41.164% | |||
Performance | Minimized Score | -1038.125 kcal/mol | ||||
Ramachandra Favored | Medium |
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QMEANBrane Quality | High |
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Ramachandran Plot |
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Click to Save Ramachandran Plot in PNG Format | ||||||
Ramz Z Score | -2.23 ±0.34 | |||||
Residues in Favored Region | 452 | Ramachandran favored | 95.97% | |||
Number of Outliers | 2 | Ramachandran outliers | 0.42% | |||
Local Quality |
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Click to Save Local Quality Plot in PNG Format | ||||||
QMEANBrane Score | 0.8 | |||||
AlphaFold Protein Structure Database | ||||||
SWISS-MODEL Database | ||||||
Experimental Structures of This DT | ||||||
PDB ID | Scanning Method | Resolution | Expression System | Details | Ref | |
8DWI | EM | 3.4 Å | Escherichia coli | [1] | ||
Structure | ||||||
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Corresponding chain | A | |||||
Sequence Length | 495 | Mutation | No | |||
8U3D | EM | 2.83 Å | Homo sapiens | [2] | ||
Structure | ||||||
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Corresponding chain | A | |||||
Sequence Length | 503 | Mutation | No | |||
8U3E | EM | 3.19 Å | Homo sapiens | [2] | ||
Structure | ||||||
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Corresponding chain | A | |||||
Sequence Length | 503 | Mutation | No | |||
8U3F | EM | 3.31 Å | Homo sapiens | [2] | ||
Structure | ||||||
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Corresponding chain | A | |||||
Sequence Length | 503 | Mutation | Yes | |||
8U3G | EM | 3.42 Å | Homo sapiens | [2] | ||
Structure | ||||||
Click to Save PDB File in TXT Format | ||||||
Corresponding chain | A | |||||
Sequence Length | 503 | Mutation | No | |||
8U3H | EM | 3.67 Å | Homo sapiens | [2] | ||
Structure | ||||||
Click to Save PDB File in TXT Format | ||||||
Corresponding chain | A | |||||
Sequence Length | 503 | Mutation | No | |||
9AYB | EM | 3.19 Å | Homo sapiens | [2] | ||
Structure | ||||||
Click to Save PDB File in TXT Format | ||||||
Corresponding chain | A | |||||
Sequence Length | 503 | Mutation | Yes | |||
References | ||||||
1 | The molecular mechanism of sialic acid transport mediated by Sialin. Sci Adv. 2023;9(3):eade8346. | |||||
2 | Structure and inhibition of the human lysosomal transporter Sialin. Nat Commun. 2024 May 23;15(1):4386. | |||||
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