General Information of Drug Transporter (DT)
DT ID DTD0009 Transporter Info
Gene Name SLC22A3
Transporter Name Organic cation transporter 3
Gene ID
6581
UniProt ID
O75751
Epigenetic Regulations of This DT (EGR)

Methylation

  Prostate cancer

         15 Epigenetic Phenomena Related to This Phenotype Click to Show/Hide the Full List

  Epigenetic Phenomenon1

Hypermethylation of SLC22A3 in prostate cancer [ 1 ]

Location

Promoter

Epigenetic Type

Methylation Experiment Method Methylation-specific PCR

Related Molecular Changes

Down regulation ofSLC22A3 Experiment Method RT-qPCR

Studied Phenotype

Prostate cancer[ ICD-11:2C82]

Frequency

62% of the studied tumor samples

Experimental Material

Patient tissue samples

Additional Notes

Aberrant methylation contributes to the reduced expression of OCT3 in prostate cancer.

  Epigenetic Phenomenon2

Methylation of SLC22A3 in prostate cancer [ 13 ]

Location

TSS1500 (cg19936194)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:1.82E+00 Statistic Test p-value:1.10E-04; Z-score:8.72E+00

Methylation in Case

1.29E-01 (Median) Methylation in Control 7.08E-02 (Median)

Studied Phenotype

Prostate cancer[ ICD-11:2C82]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon3

Methylation of SLC22A3 in prostate cancer [ 13 ]

Location

TSS1500 (cg27520549)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:1.12E+00 Statistic Test p-value:2.31E-02; Z-score:1.66E+00

Methylation in Case

9.17E-01 (Median) Methylation in Control 8.20E-01 (Median)

Studied Phenotype

Prostate cancer[ ICD-11:2C82]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon4

Methylation of SLC22A3 in prostate cancer [ 13 ]

Location

TSS200 (cg07589968)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:1.41E+00 Statistic Test p-value:7.97E-03; Z-score:7.46E+00

Methylation in Case

6.61E-01 (Median) Methylation in Control 4.68E-01 (Median)

Studied Phenotype

Prostate cancer[ ICD-11:2C82]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon5

Methylation of SLC22A3 in prostate cancer [ 13 ]

Location

1stExon (cg06987672)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:2.00E+00 Statistic Test p-value:2.23E-02; Z-score:8.99E+00

Methylation in Case

1.78E-01 (Median) Methylation in Control 8.89E-02 (Median)

Studied Phenotype

Prostate cancer[ ICD-11:2C82]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon6

Methylation of SLC22A3 in prostate cancer [ 13 ]

Location

1stExon (cg09840840)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.45E+00 Statistic Test p-value:4.68E-02; Z-score:-2.18E+00

Methylation in Case

5.05E-02 (Median) Methylation in Control 7.30E-02 (Median)

Studied Phenotype

Prostate cancer[ ICD-11:2C82]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon7

Methylation of SLC22A3 in prostate cancer [ 13 ]

Location

Body (cg03816707)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:2.12E+00 Statistic Test p-value:2.57E-03; Z-score:3.88E+00

Methylation in Case

5.43E-01 (Median) Methylation in Control 2.57E-01 (Median)

Studied Phenotype

Prostate cancer[ ICD-11:2C82]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon8

Methylation of SLC22A3 in prostate cancer [ 13 ]

Location

Body (cg03924551)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:1.24E+00 Statistic Test p-value:3.15E-03; Z-score:2.84E+00

Methylation in Case

8.75E-01 (Median) Methylation in Control 7.08E-01 (Median)

Studied Phenotype

Prostate cancer[ ICD-11:2C82]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon9

Methylation of SLC22A3 in prostate cancer [ 13 ]

Location

Body (cg02114341)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:1.13E+00 Statistic Test p-value:3.96E-03; Z-score:3.03E+00

Methylation in Case

9.10E-01 (Median) Methylation in Control 8.04E-01 (Median)

Studied Phenotype

Prostate cancer[ ICD-11:2C82]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon10

Methylation of SLC22A3 in prostate cancer [ 13 ]

Location

Body (cg12619347)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.27E+00 Statistic Test p-value:9.34E-03; Z-score:-3.31E+00

Methylation in Case

6.03E-01 (Median) Methylation in Control 7.68E-01 (Median)

Studied Phenotype

Prostate cancer[ ICD-11:2C82]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon11

Methylation of SLC22A3 in prostate cancer [ 13 ]

Location

Body (cg01432055)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:1.04E+00 Statistic Test p-value:9.92E-03; Z-score:2.59E+00

Methylation in Case

9.52E-01 (Median) Methylation in Control 9.18E-01 (Median)

Studied Phenotype

Prostate cancer[ ICD-11:2C82]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon12

Methylation of SLC22A3 in prostate cancer [ 13 ]

Location

Body (cg09790270)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:1.36E+00 Statistic Test p-value:2.57E-02; Z-score:2.30E+00

Methylation in Case

7.07E-01 (Median) Methylation in Control 5.19E-01 (Median)

Studied Phenotype

Prostate cancer[ ICD-11:2C82]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon13

Methylation of SLC22A3 in prostate cancer [ 13 ]

Location

Body (cg10125193)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:1.07E+00 Statistic Test p-value:3.83E-02; Z-score:1.93E+00

Methylation in Case

9.09E-01 (Median) Methylation in Control 8.51E-01 (Median)

Studied Phenotype

Prostate cancer[ ICD-11:2C82]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon14

Methylation of SLC22A3 in prostate cancer [ 13 ]

Location

Body (cg20083442)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.48E+00 Statistic Test p-value:3.92E-02; Z-score:-3.02E+00

Methylation in Case

4.19E-01 (Median) Methylation in Control 6.17E-01 (Median)

Studied Phenotype

Prostate cancer[ ICD-11:2C82]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon15

Methylation of SLC22A3 in prostate cancer [ 13 ]

Location

Body (cg22077670)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:1.27E+00 Statistic Test p-value:4.81E-02; Z-score:1.81E+00

Methylation in Case

8.28E-01 (Median) Methylation in Control 6.55E-01 (Median)

Studied Phenotype

Prostate cancer[ ICD-11:2C82]

Experimental Material

Patient tissue samples

  Diabetes

           1 Epigenetic Phenomena Related to This Phenotype Click to Show/Hide the Full List

  Epigenetic Phenomenon1

Hypermethylation of SLC22A3 in diabetes [ 2 ]

Location

Promoter (5 CpG sites)

Epigenetic Type

Methylation Experiment Method HumanMethylation450 BeadChip

Related Molecular Changes

Down regulation ofSLC22A3 Experiment Method RT-qPCR

Studied Phenotype

Diabetes[ ICD-11:5A10-5A14]

Experimental Material

Patient tissue samples

Additional Notes

Higher methylation in a CpG site located in SLC22A3 was associated with lower expression in the human liver and also with insulin plus metformin therapy, higher glucose levels, and BMI.

  Esophageal squamous cell carcinoma

           1 Epigenetic Phenomena Related to This Phenotype Click to Show/Hide the Full List

  Epigenetic Phenomenon1

Hypermethylation of SLC22A3 in esophageal squamous cell carcinoma [ 3 ]

Location

Promoter

Epigenetic Type

Methylation Experiment Method Methylation-specific PCR

Related Molecular Changes

Down regulation ofSLC22A3 Experiment Method RT-qPCR

Studied Phenotype

Esophageal squamous cell carcinoma[ ICD-11:2E60.1]

Experimental Material

Patient tissue samples

Additional Notes

SLC22A3 promoter Hypermethylation may directly suppresses its gene transcription, resulting in increased susceptibility to ESCC in high-risk individuals.

  Pancretic ductal adenocarcinoma

         10 Epigenetic Phenomena Related to This Phenotype Click to Show/Hide the Full List

  Epigenetic Phenomenon1

Methylation of SLC22A3 in pancretic ductal adenocarcinoma [ 4 ]

Location

5'UTR (cg27403989)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.14E+00 Statistic Test p-value:1.51E-05; Z-score:-1.23E+00

Methylation in Case

7.10E-01 (Median) Methylation in Control 8.11E-01 (Median)

Studied Phenotype

Pancretic ductal adenocarcinoma[ ICD-11:2C10.0]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon2

Methylation of SLC22A3 in pancretic ductal adenocarcinoma [ 4 ]

Location

5'UTR (cg07007420)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.01E+00 Statistic Test p-value:2.87E-04; Z-score:-4.82E-01

Methylation in Case

8.93E-01 (Median) Methylation in Control 9.03E-01 (Median)

Studied Phenotype

Pancretic ductal adenocarcinoma[ ICD-11:2C10.0]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon3

Methylation of SLC22A3 in pancretic ductal adenocarcinoma [ 4 ]

Location

TSS1500 (cg13875111)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.20E+00 Statistic Test p-value:3.67E-02; Z-score:-6.99E-01

Methylation in Case

1.48E-01 (Median) Methylation in Control 1.78E-01 (Median)

Studied Phenotype

Pancretic ductal adenocarcinoma[ ICD-11:2C10.0]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon4

Methylation of SLC22A3 in pancretic ductal adenocarcinoma [ 4 ]

Location

TSS200 (cg04431946)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:2.39E+00 Statistic Test p-value:2.19E-31; Z-score:5.00E+00

Methylation in Case

5.04E-01 (Median) Methylation in Control 2.11E-01 (Median)

Studied Phenotype

Pancretic ductal adenocarcinoma[ ICD-11:2C10.0]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon5

Methylation of SLC22A3 in pancretic ductal adenocarcinoma [ 4 ]

Location

TSS200 (cg17920479)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:1.39E+00 Statistic Test p-value:3.81E-18; Z-score:2.96E+00

Methylation in Case

4.49E-01 (Median) Methylation in Control 3.22E-01 (Median)

Studied Phenotype

Pancretic ductal adenocarcinoma[ ICD-11:2C10.0]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon6

Methylation of SLC22A3 in pancretic ductal adenocarcinoma [ 4 ]

Location

TSS200 (cg18313899)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:1.72E+00 Statistic Test p-value:7.48E-17; Z-score:3.10E+00

Methylation in Case

2.60E-01 (Median) Methylation in Control 1.51E-01 (Median)

Studied Phenotype

Pancretic ductal adenocarcinoma[ ICD-11:2C10.0]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon7

Methylation of SLC22A3 in pancretic ductal adenocarcinoma [ 4 ]

Location

Body (cg27315497)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:1.25E+00 Statistic Test p-value:1.32E-11; Z-score:2.34E+00

Methylation in Case

5.50E-01 (Median) Methylation in Control 4.41E-01 (Median)

Studied Phenotype

Pancretic ductal adenocarcinoma[ ICD-11:2C10.0]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon8

Methylation of SLC22A3 in pancretic ductal adenocarcinoma [ 4 ]

Location

Body (cg09359103)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.44E+00 Statistic Test p-value:3.74E-10; Z-score:-1.71E+00

Methylation in Case

3.31E-01 (Median) Methylation in Control 4.76E-01 (Median)

Studied Phenotype

Pancretic ductal adenocarcinoma[ ICD-11:2C10.0]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon9

Methylation of SLC22A3 in pancretic ductal adenocarcinoma [ 4 ]

Location

Body (cg04860674)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.03E+00 Statistic Test p-value:5.68E-09; Z-score:-9.67E-01

Methylation in Case

8.47E-01 (Median) Methylation in Control 8.74E-01 (Median)

Studied Phenotype

Pancretic ductal adenocarcinoma[ ICD-11:2C10.0]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon10

Methylation of SLC22A3 in pancretic ductal adenocarcinoma [ 4 ]

Location

Body (cg04036777)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.16E+00 Statistic Test p-value:3.60E-03; Z-score:-6.49E-01

Methylation in Case

4.40E-01 (Median) Methylation in Control 5.12E-01 (Median)

Studied Phenotype

Pancretic ductal adenocarcinoma[ ICD-11:2C10.0]

Experimental Material

Patient tissue samples

  Bladder cancer

         13 Epigenetic Phenomena Related to This Phenotype Click to Show/Hide the Full List

  Epigenetic Phenomenon1

Methylation of SLC22A3 in bladder cancer [ 5 ]

Location

TSS1500 (cg25313204)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.32E+00 Statistic Test p-value:1.83E-03; Z-score:-2.09E+00

Methylation in Case

4.05E-01 (Median) Methylation in Control 5.35E-01 (Median)

Studied Phenotype

Bladder cancer[ ICD-11:2C94]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon2

Methylation of SLC22A3 in bladder cancer [ 5 ]

Location

TSS1500 (cg22117918)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:1.27E+00 Statistic Test p-value:3.83E-02; Z-score:1.40E+00

Methylation in Case

2.03E-01 (Median) Methylation in Control 1.60E-01 (Median)

Studied Phenotype

Bladder cancer[ ICD-11:2C94]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon3

Methylation of SLC22A3 in bladder cancer [ 5 ]

Location

Body (cg23898998)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.46E+00 Statistic Test p-value:2.00E-07; Z-score:-1.15E+01

Methylation in Case

4.58E-01 (Median) Methylation in Control 6.68E-01 (Median)

Studied Phenotype

Bladder cancer[ ICD-11:2C94]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon4

Methylation of SLC22A3 in bladder cancer [ 5 ]

Location

Body (cg09226986)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:1.69E+00 Statistic Test p-value:3.02E-05; Z-score:5.16E+00

Methylation in Case

7.96E-01 (Median) Methylation in Control 4.72E-01 (Median)

Studied Phenotype

Bladder cancer[ ICD-11:2C94]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon5

Methylation of SLC22A3 in bladder cancer [ 5 ]

Location

Body (cg04794858)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.16E+00 Statistic Test p-value:2.64E-04; Z-score:-5.28E+00

Methylation in Case

7.45E-01 (Median) Methylation in Control 8.67E-01 (Median)

Studied Phenotype

Bladder cancer[ ICD-11:2C94]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon6

Methylation of SLC22A3 in bladder cancer [ 5 ]

Location

Body (cg13280882)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.07E+00 Statistic Test p-value:1.33E-03; Z-score:-1.96E+00

Methylation in Case

8.01E-01 (Median) Methylation in Control 8.60E-01 (Median)

Studied Phenotype

Bladder cancer[ ICD-11:2C94]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon7

Methylation of SLC22A3 in bladder cancer [ 5 ]

Location

Body (cg01923312)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.22E+00 Statistic Test p-value:1.79E-03; Z-score:-3.77E+00

Methylation in Case

6.32E-01 (Median) Methylation in Control 7.70E-01 (Median)

Studied Phenotype

Bladder cancer[ ICD-11:2C94]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon8

Methylation of SLC22A3 in bladder cancer [ 5 ]

Location

Body (cg15363979)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.02E+00 Statistic Test p-value:5.22E-03; Z-score:-3.02E+00

Methylation in Case

8.95E-01 (Median) Methylation in Control 9.16E-01 (Median)

Studied Phenotype

Bladder cancer[ ICD-11:2C94]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon9

Methylation of SLC22A3 in bladder cancer [ 5 ]

Location

Body (cg24358785)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:1.19E+00 Statistic Test p-value:7.04E-03; Z-score:3.45E+00

Methylation in Case

6.73E-01 (Median) Methylation in Control 5.67E-01 (Median)

Studied Phenotype

Bladder cancer[ ICD-11:2C94]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon10

Methylation of SLC22A3 in bladder cancer [ 5 ]

Location

Body (cg06295784)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.09E+00 Statistic Test p-value:1.23E-02; Z-score:-1.89E+00

Methylation in Case

6.17E-01 (Median) Methylation in Control 6.75E-01 (Median)

Studied Phenotype

Bladder cancer[ ICD-11:2C94]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon11

Methylation of SLC22A3 in bladder cancer [ 5 ]

Location

Body (cg14255768)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.03E+00 Statistic Test p-value:3.15E-02; Z-score:-6.38E-01

Methylation in Case

5.07E-01 (Median) Methylation in Control 5.23E-01 (Median)

Studied Phenotype

Bladder cancer[ ICD-11:2C94]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon12

Methylation of SLC22A3 in bladder cancer [ 5 ]

Location

Body (cg17768600)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:1.14E+00 Statistic Test p-value:4.23E-02; Z-score:1.81E+00

Methylation in Case

7.28E-01 (Median) Methylation in Control 6.41E-01 (Median)

Studied Phenotype

Bladder cancer[ ICD-11:2C94]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon13

Methylation of SLC22A3 in bladder cancer [ 5 ]

Location

3'UTR (cg00321824)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.41E+00 Statistic Test p-value:9.40E-08; Z-score:-1.35E+01

Methylation in Case

5.70E-01 (Median) Methylation in Control 8.03E-01 (Median)

Studied Phenotype

Bladder cancer[ ICD-11:2C94]

Experimental Material

Patient tissue samples

  Breast cancer

         22 Epigenetic Phenomena Related to This Phenotype Click to Show/Hide the Full List

  Epigenetic Phenomenon1

Methylation of SLC22A3 in breast cancer [ 6 ]

Location

TSS1500 (cg22117918)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:1.26E+00 Statistic Test p-value:6.87E-09; Z-score:1.49E+00

Methylation in Case

2.80E-01 (Median) Methylation in Control 2.22E-01 (Median)

Studied Phenotype

Breast cancer[ ICD-11:2C60-2C6Z]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon2

Methylation of SLC22A3 in breast cancer [ 6 ]

Location

TSS1500 (cg07883823)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:1.32E+00 Statistic Test p-value:8.44E-08; Z-score:1.48E+00

Methylation in Case

3.14E-01 (Median) Methylation in Control 2.37E-01 (Median)

Studied Phenotype

Breast cancer[ ICD-11:2C60-2C6Z]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon3

Methylation of SLC22A3 in breast cancer [ 6 ]

Location

TSS1500 (cg21110739)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.05E+00 Statistic Test p-value:2.79E-07; Z-score:-1.26E+00

Methylation in Case

7.68E-01 (Median) Methylation in Control 8.07E-01 (Median)

Studied Phenotype

Breast cancer[ ICD-11:2C60-2C6Z]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon4

Methylation of SLC22A3 in breast cancer [ 6 ]

Location

TSS1500 (cg25313204)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.08E+00 Statistic Test p-value:2.50E-03; Z-score:-7.53E-01

Methylation in Case

5.95E-01 (Median) Methylation in Control 6.44E-01 (Median)

Studied Phenotype

Breast cancer[ ICD-11:2C60-2C6Z]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon5

Methylation of SLC22A3 in breast cancer [ 6 ]

Location

TSS200 (cg17364114)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:2.41E+00 Statistic Test p-value:3.71E-08; Z-score:1.16E+00

Methylation in Case

1.44E-01 (Median) Methylation in Control 5.98E-02 (Median)

Studied Phenotype

Breast cancer[ ICD-11:2C60-2C6Z]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon6

Methylation of SLC22A3 in breast cancer [ 6 ]

Location

1stExon (cg07237939)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:2.63E+00 Statistic Test p-value:2.56E-10; Z-score:1.90E+00

Methylation in Case

1.07E-01 (Median) Methylation in Control 4.05E-02 (Median)

Studied Phenotype

Breast cancer[ ICD-11:2C60-2C6Z]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon7

Methylation of SLC22A3 in breast cancer [ 6 ]

Location

Body (cg23898998)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.50E+00 Statistic Test p-value:2.93E-24; Z-score:-5.02E+00

Methylation in Case

4.70E-01 (Median) Methylation in Control 7.03E-01 (Median)

Studied Phenotype

Breast cancer[ ICD-11:2C60-2C6Z]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon8

Methylation of SLC22A3 in breast cancer [ 6 ]

Location

Body (cg15020894)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.55E+00 Statistic Test p-value:4.72E-22; Z-score:-3.09E+00

Methylation in Case

3.70E-01 (Median) Methylation in Control 5.74E-01 (Median)

Studied Phenotype

Breast cancer[ ICD-11:2C60-2C6Z]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon9

Methylation of SLC22A3 in breast cancer [ 6 ]

Location

Body (cg04794858)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.37E+00 Statistic Test p-value:5.42E-20; Z-score:-6.89E+00

Methylation in Case

6.27E-01 (Median) Methylation in Control 8.60E-01 (Median)

Studied Phenotype

Breast cancer[ ICD-11:2C60-2C6Z]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon10

Methylation of SLC22A3 in breast cancer [ 6 ]

Location

Body (cg15363979)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.10E+00 Statistic Test p-value:1.53E-14; Z-score:-3.09E+00

Methylation in Case

8.14E-01 (Median) Methylation in Control 9.00E-01 (Median)

Studied Phenotype

Breast cancer[ ICD-11:2C60-2C6Z]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon11

Methylation of SLC22A3 in breast cancer [ 6 ]

Location

Body (cg09226986)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:1.61E+00 Statistic Test p-value:3.47E-14; Z-score:2.89E+00

Methylation in Case

5.65E-01 (Median) Methylation in Control 3.51E-01 (Median)

Studied Phenotype

Breast cancer[ ICD-11:2C60-2C6Z]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon12

Methylation of SLC22A3 in breast cancer [ 6 ]

Location

Body (cg13280882)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.14E+00 Statistic Test p-value:7.63E-11; Z-score:-2.96E+00

Methylation in Case

7.44E-01 (Median) Methylation in Control 8.44E-01 (Median)

Studied Phenotype

Breast cancer[ ICD-11:2C60-2C6Z]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon13

Methylation of SLC22A3 in breast cancer [ 6 ]

Location

Body (cg02042585)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.17E+00 Statistic Test p-value:1.04E-10; Z-score:-1.73E+00

Methylation in Case

6.36E-01 (Median) Methylation in Control 7.46E-01 (Median)

Studied Phenotype

Breast cancer[ ICD-11:2C60-2C6Z]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon14

Methylation of SLC22A3 in breast cancer [ 6 ]

Location

Body (cg17768600)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.18E+00 Statistic Test p-value:8.44E-09; Z-score:-1.60E+00

Methylation in Case

5.70E-01 (Median) Methylation in Control 6.70E-01 (Median)

Studied Phenotype

Breast cancer[ ICD-11:2C60-2C6Z]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon15

Methylation of SLC22A3 in breast cancer [ 6 ]

Location

Body (cg14255768)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.43E+00 Statistic Test p-value:2.97E-08; Z-score:-1.87E+00

Methylation in Case

3.72E-01 (Median) Methylation in Control 5.31E-01 (Median)

Studied Phenotype

Breast cancer[ ICD-11:2C60-2C6Z]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon16

Methylation of SLC22A3 in breast cancer [ 6 ]

Location

Body (cg19149031)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.13E+00 Statistic Test p-value:3.69E-07; Z-score:-1.32E+00

Methylation in Case

7.54E-01 (Median) Methylation in Control 8.50E-01 (Median)

Studied Phenotype

Breast cancer[ ICD-11:2C60-2C6Z]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon17

Methylation of SLC22A3 in breast cancer [ 6 ]

Location

Body (cg18126027)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.08E+00 Statistic Test p-value:2.74E-06; Z-score:-1.25E+00

Methylation in Case

8.08E-01 (Median) Methylation in Control 8.72E-01 (Median)

Studied Phenotype

Breast cancer[ ICD-11:2C60-2C6Z]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon18

Methylation of SLC22A3 in breast cancer [ 6 ]

Location

Body (cg24358785)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.12E+00 Statistic Test p-value:5.55E-06; Z-score:-1.28E+00

Methylation in Case

5.57E-01 (Median) Methylation in Control 6.23E-01 (Median)

Studied Phenotype

Breast cancer[ ICD-11:2C60-2C6Z]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon19

Methylation of SLC22A3 in breast cancer [ 6 ]

Location

Body (cg08303612)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:1.20E+00 Statistic Test p-value:1.40E-05; Z-score:5.41E-01

Methylation in Case

1.39E-01 (Median) Methylation in Control 1.17E-01 (Median)

Studied Phenotype

Breast cancer[ ICD-11:2C60-2C6Z]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon20

Methylation of SLC22A3 in breast cancer [ 6 ]

Location

Body (cg11696576)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.09E+00 Statistic Test p-value:4.87E-04; Z-score:-5.11E-01

Methylation in Case

6.61E-01 (Median) Methylation in Control 7.23E-01 (Median)

Studied Phenotype

Breast cancer[ ICD-11:2C60-2C6Z]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon21

Methylation of SLC22A3 in breast cancer [ 6 ]

Location

Body (cg06295784)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:1.01E+00 Statistic Test p-value:1.43E-02; Z-score:1.15E-01

Methylation in Case

6.69E-01 (Median) Methylation in Control 6.64E-01 (Median)

Studied Phenotype

Breast cancer[ ICD-11:2C60-2C6Z]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon22

Methylation of SLC22A3 in breast cancer [ 6 ]

Location

3'UTR (cg00321824)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.36E+00 Statistic Test p-value:8.19E-16; Z-score:-3.48E+00

Methylation in Case

5.82E-01 (Median) Methylation in Control 7.93E-01 (Median)

Studied Phenotype

Breast cancer[ ICD-11:2C60-2C6Z]

Experimental Material

Patient tissue samples

  Renal cell carcinoma

           7 Epigenetic Phenomena Related to This Phenotype Click to Show/Hide the Full List

  Epigenetic Phenomenon1

Methylation of SLC22A3 in clear cell renal cell carcinoma [ 7 ]

Location

TSS1500 (cg21110739)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.02E+00 Statistic Test p-value:1.42E-04; Z-score:-1.09E+00

Methylation in Case

8.93E-01 (Median) Methylation in Control 9.15E-01 (Median)

Studied Phenotype

Renal cell carcinoma[ ICD-11:2C90]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon2

Methylation of SLC22A3 in clear cell renal cell carcinoma [ 7 ]

Location

TSS1500 (cg22117918)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:1.16E+00 Statistic Test p-value:2.44E-02; Z-score:5.00E-01

Methylation in Case

1.61E-01 (Median) Methylation in Control 1.39E-01 (Median)

Studied Phenotype

Renal cell carcinoma[ ICD-11:2C90]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon3

Methylation of SLC22A3 in clear cell renal cell carcinoma [ 7 ]

Location

TSS200 (cg17364114)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:1.29E+00 Statistic Test p-value:3.51E-02; Z-score:2.07E-01

Methylation in Case

2.36E-02 (Median) Methylation in Control 1.83E-02 (Median)

Studied Phenotype

Renal cell carcinoma[ ICD-11:2C90]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon4

Methylation of SLC22A3 in clear cell renal cell carcinoma [ 7 ]

Location

1stExon (cg07237939)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:1.16E+00 Statistic Test p-value:2.53E-02; Z-score:2.01E-01

Methylation in Case

2.13E-02 (Median) Methylation in Control 1.83E-02 (Median)

Studied Phenotype

Renal cell carcinoma[ ICD-11:2C90]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon5

Methylation of SLC22A3 in clear cell renal cell carcinoma [ 7 ]

Location

Body (cg15363979)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.02E+00 Statistic Test p-value:1.51E-06; Z-score:-1.34E+00

Methylation in Case

9.14E-01 (Median) Methylation in Control 9.37E-01 (Median)

Studied Phenotype

Renal cell carcinoma[ ICD-11:2C90]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon6

Methylation of SLC22A3 in clear cell renal cell carcinoma [ 7 ]

Location

Body (cg13280882)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.03E+00 Statistic Test p-value:1.25E-02; Z-score:-6.79E-01

Methylation in Case

8.78E-01 (Median) Methylation in Control 9.07E-01 (Median)

Studied Phenotype

Renal cell carcinoma[ ICD-11:2C90]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon7

Methylation of SLC22A3 in clear cell renal cell carcinoma [ 7 ]

Location

Body (cg02042585)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.04E+00 Statistic Test p-value:1.81E-02; Z-score:-6.75E-01

Methylation in Case

8.61E-01 (Median) Methylation in Control 8.93E-01 (Median)

Studied Phenotype

Renal cell carcinoma[ ICD-11:2C90]

Experimental Material

Patient tissue samples

  Colorectal cancer

           7 Epigenetic Phenomena Related to This Phenotype Click to Show/Hide the Full List

  Epigenetic Phenomenon1

Methylation of SLC22A3 in colorectal cancer [ 8 ]

Location

TSS1500 (cg21110739)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.01E+00 Statistic Test p-value:6.15E-04; Z-score:-9.57E-01

Methylation in Case

9.30E-01 (Median) Methylation in Control 9.38E-01 (Median)

Studied Phenotype

Colorectal cancer[ ICD-11:2B91]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon2

Methylation of SLC22A3 in colorectal cancer [ 8 ]

Location

Body (cg15363979)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.01E+00 Statistic Test p-value:6.80E-04; Z-score:-1.16E+00

Methylation in Case

9.27E-01 (Median) Methylation in Control 9.37E-01 (Median)

Studied Phenotype

Colorectal cancer[ ICD-11:2B91]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon3

Methylation of SLC22A3 in colorectal cancer [ 8 ]

Location

Body (cg23898998)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.02E+00 Statistic Test p-value:1.75E-02; Z-score:-4.43E-01

Methylation in Case

8.50E-01 (Median) Methylation in Control 8.68E-01 (Median)

Studied Phenotype

Colorectal cancer[ ICD-11:2B91]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon4

Methylation of SLC22A3 in colorectal cancer [ 8 ]

Location

Body (cg14255768)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.02E+00 Statistic Test p-value:3.20E-02; Z-score:-6.66E-01

Methylation in Case

8.01E-01 (Median) Methylation in Control 8.20E-01 (Median)

Studied Phenotype

Colorectal cancer[ ICD-11:2B91]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon5

Methylation of SLC22A3 in colorectal cancer [ 8 ]

Location

Body (cg11696576)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.02E+00 Statistic Test p-value:4.56E-02; Z-score:-3.56E-01

Methylation in Case

8.90E-01 (Median) Methylation in Control 9.08E-01 (Median)

Studied Phenotype

Colorectal cancer[ ICD-11:2B91]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon6

Methylation of SLC22A3 in colorectal cancer [ 8 ]

Location

Body (cg06295784)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.13E+00 Statistic Test p-value:4.93E-02; Z-score:-7.32E-01

Methylation in Case

6.67E-01 (Median) Methylation in Control 7.53E-01 (Median)

Studied Phenotype

Colorectal cancer[ ICD-11:2B91]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon7

Methylation of SLC22A3 in colorectal cancer [ 8 ]

Location

3'UTR (cg00321824)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.02E+00 Statistic Test p-value:4.46E-03; Z-score:-3.83E-01

Methylation in Case

7.98E-01 (Median) Methylation in Control 8.14E-01 (Median)

Studied Phenotype

Colorectal cancer[ ICD-11:2B91]

Experimental Material

Patient tissue samples

  Hepatocellular carcinoma

         18 Epigenetic Phenomena Related to This Phenotype Click to Show/Hide the Full List

  Epigenetic Phenomenon1

Methylation of SLC22A3 in hepatocellular carcinoma [ 9 ]

Location

TSS1500 (cg26489057)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:1.77E+00 Statistic Test p-value:1.47E-13; Z-score:3.67E+00

Methylation in Case

5.21E-01 (Median) Methylation in Control 2.94E-01 (Median)

Studied Phenotype

Hepatocellular carcinoma[ ICD-11:2C12.02]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon2

Methylation of SLC22A3 in hepatocellular carcinoma [ 9 ]

Location

TSS1500 (cg07883823)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.43E+00 Statistic Test p-value:3.54E-04; Z-score:-1.05E+00

Methylation in Case

1.21E-01 (Median) Methylation in Control 1.72E-01 (Median)

Studied Phenotype

Hepatocellular carcinoma[ ICD-11:2C12.02]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon3

Methylation of SLC22A3 in hepatocellular carcinoma [ 9 ]

Location

TSS1500 (cg22117918)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.33E+00 Statistic Test p-value:2.10E-03; Z-score:-9.30E-01

Methylation in Case

1.18E-01 (Median) Methylation in Control 1.57E-01 (Median)

Studied Phenotype

Hepatocellular carcinoma[ ICD-11:2C12.02]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon4

Methylation of SLC22A3 in hepatocellular carcinoma [ 9 ]

Location

TSS200 (cg17364114)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-2.08E+00 Statistic Test p-value:4.44E-04; Z-score:-5.64E-01

Methylation in Case

2.35E-02 (Median) Methylation in Control 4.91E-02 (Median)

Studied Phenotype

Hepatocellular carcinoma[ ICD-11:2C12.02]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon5

Methylation of SLC22A3 in hepatocellular carcinoma [ 9 ]

Location

1stExon (cg07237939)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.43E+00 Statistic Test p-value:1.91E-04; Z-score:-5.09E-01

Methylation in Case

3.13E-02 (Median) Methylation in Control 4.48E-02 (Median)

Studied Phenotype

Hepatocellular carcinoma[ ICD-11:2C12.02]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon6

Methylation of SLC22A3 in hepatocellular carcinoma [ 9 ]

Location

Body (cg00706648)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.25E+00 Statistic Test p-value:8.10E-25; Z-score:-7.57E+00

Methylation in Case

6.38E-01 (Median) Methylation in Control 7.97E-01 (Median)

Studied Phenotype

Hepatocellular carcinoma[ ICD-11:2C12.02]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon7

Methylation of SLC22A3 in hepatocellular carcinoma [ 9 ]

Location

Body (cg14387909)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.69E+00 Statistic Test p-value:8.57E-17; Z-score:-7.87E+00

Methylation in Case

5.26E-01 (Median) Methylation in Control 8.87E-01 (Median)

Studied Phenotype

Hepatocellular carcinoma[ ICD-11:2C12.02]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon8

Methylation of SLC22A3 in hepatocellular carcinoma [ 9 ]

Location

Body (cg03912954)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:2.41E+00 Statistic Test p-value:5.76E-16; Z-score:5.00E+00

Methylation in Case

2.70E-01 (Median) Methylation in Control 1.12E-01 (Median)

Studied Phenotype

Hepatocellular carcinoma[ ICD-11:2C12.02]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon9

Methylation of SLC22A3 in hepatocellular carcinoma [ 9 ]

Location

Body (cg09226986)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:1.05E+00 Statistic Test p-value:1.32E-08; Z-score:9.32E-01

Methylation in Case

8.31E-01 (Median) Methylation in Control 7.89E-01 (Median)

Studied Phenotype

Hepatocellular carcinoma[ ICD-11:2C12.02]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon10

Methylation of SLC22A3 in hepatocellular carcinoma [ 9 ]

Location

Body (cg15020894)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.28E+00 Statistic Test p-value:3.42E-08; Z-score:-1.85E+00

Methylation in Case

3.56E-01 (Median) Methylation in Control 4.56E-01 (Median)

Studied Phenotype

Hepatocellular carcinoma[ ICD-11:2C12.02]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon11

Methylation of SLC22A3 in hepatocellular carcinoma [ 9 ]

Location

Body (cg11696576)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.28E+00 Statistic Test p-value:3.62E-08; Z-score:-1.35E+00

Methylation in Case

4.35E-01 (Median) Methylation in Control 5.57E-01 (Median)

Studied Phenotype

Hepatocellular carcinoma[ ICD-11:2C12.02]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon12

Methylation of SLC22A3 in hepatocellular carcinoma [ 9 ]

Location

Body (cg13280882)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.13E+00 Statistic Test p-value:3.47E-07; Z-score:-1.29E+00

Methylation in Case

7.15E-01 (Median) Methylation in Control 8.09E-01 (Median)

Studied Phenotype

Hepatocellular carcinoma[ ICD-11:2C12.02]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon13

Methylation of SLC22A3 in hepatocellular carcinoma [ 9 ]

Location

Body (cg06295784)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.23E+00 Statistic Test p-value:1.53E-05; Z-score:-1.07E+00

Methylation in Case

4.25E-01 (Median) Methylation in Control 5.22E-01 (Median)

Studied Phenotype

Hepatocellular carcinoma[ ICD-11:2C12.02]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon14

Methylation of SLC22A3 in hepatocellular carcinoma [ 9 ]

Location

Body (cg08303612)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.23E+00 Statistic Test p-value:2.82E-05; Z-score:-7.84E-01

Methylation in Case

6.81E-02 (Median) Methylation in Control 8.34E-02 (Median)

Studied Phenotype

Hepatocellular carcinoma[ ICD-11:2C12.02]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon15

Methylation of SLC22A3 in hepatocellular carcinoma [ 9 ]

Location

Body (cg02042585)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:1.04E+00 Statistic Test p-value:7.03E-05; Z-score:6.58E-01

Methylation in Case

8.12E-01 (Median) Methylation in Control 7.78E-01 (Median)

Studied Phenotype

Hepatocellular carcinoma[ ICD-11:2C12.02]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon16

Methylation of SLC22A3 in hepatocellular carcinoma [ 9 ]

Location

Body (cg07349212)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.17E+00 Statistic Test p-value:6.88E-04; Z-score:-7.22E-01

Methylation in Case

5.95E-02 (Median) Methylation in Control 6.94E-02 (Median)

Studied Phenotype

Hepatocellular carcinoma[ ICD-11:2C12.02]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon17

Methylation of SLC22A3 in hepatocellular carcinoma [ 9 ]

Location

Body (cg17768600)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:1.04E+00 Statistic Test p-value:1.02E-02; Z-score:4.12E-01

Methylation in Case

7.32E-01 (Median) Methylation in Control 7.05E-01 (Median)

Studied Phenotype

Hepatocellular carcinoma[ ICD-11:2C12.02]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon18

Methylation of SLC22A3 in hepatocellular carcinoma [ 9 ]

Location

Body (cg18126027)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.01E+00 Statistic Test p-value:4.86E-02; Z-score:-1.42E-01

Methylation in Case

8.64E-01 (Median) Methylation in Control 8.69E-01 (Median)

Studied Phenotype

Hepatocellular carcinoma[ ICD-11:2C12.02]

Experimental Material

Patient tissue samples

  HIV infection

         11 Epigenetic Phenomena Related to This Phenotype Click to Show/Hide the Full List

  Epigenetic Phenomenon1

Methylation of SLC22A3 in HIV infection [ 10 ]

Location

TSS1500 (cg07883823)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:1.59E+00 Statistic Test p-value:2.26E-06; Z-score:2.66E+00

Methylation in Case

2.44E-01 (Median) Methylation in Control 1.54E-01 (Median)

Studied Phenotype

HIV infection[ ICD-11:1C62.Z]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon2

Methylation of SLC22A3 in HIV infection [ 10 ]

Location

TSS1500 (cg22117918)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:1.29E+00 Statistic Test p-value:1.39E-05; Z-score:1.68E+00

Methylation in Case

2.15E-01 (Median) Methylation in Control 1.66E-01 (Median)

Studied Phenotype

HIV infection[ ICD-11:1C62.Z]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon3

Methylation of SLC22A3 in HIV infection [ 10 ]

Location

TSS200 (cg17364114)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:6.68E+00 Statistic Test p-value:1.28E-03; Z-score:2.10E+00

Methylation in Case

1.05E-01 (Median) Methylation in Control 1.57E-02 (Median)

Studied Phenotype

HIV infection[ ICD-11:1C62.Z]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon4

Methylation of SLC22A3 in HIV infection [ 10 ]

Location

1stExon (cg07237939)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:2.79E+00 Statistic Test p-value:1.88E-04; Z-score:2.08E+00

Methylation in Case

5.40E-02 (Median) Methylation in Control 1.93E-02 (Median)

Studied Phenotype

HIV infection[ ICD-11:1C62.Z]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon5

Methylation of SLC22A3 in HIV infection [ 10 ]

Location

Body (cg04794858)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.04E+00 Statistic Test p-value:1.40E-04; Z-score:-1.04E+00

Methylation in Case

8.88E-01 (Median) Methylation in Control 9.20E-01 (Median)

Studied Phenotype

HIV infection[ ICD-11:1C62.Z]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon6

Methylation of SLC22A3 in HIV infection [ 10 ]

Location

Body (cg15020894)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.13E+00 Statistic Test p-value:2.20E-04; Z-score:-1.03E+00

Methylation in Case

4.67E-01 (Median) Methylation in Control 5.26E-01 (Median)

Studied Phenotype

HIV infection[ ICD-11:1C62.Z]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon7

Methylation of SLC22A3 in HIV infection [ 10 ]

Location

Body (cg08303612)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:1.29E+00 Statistic Test p-value:5.28E-04; Z-score:1.21E+00

Methylation in Case

1.06E-01 (Median) Methylation in Control 8.20E-02 (Median)

Studied Phenotype

HIV infection[ ICD-11:1C62.Z]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon8

Methylation of SLC22A3 in HIV infection [ 10 ]

Location

Body (cg15363979)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:1.02E+00 Statistic Test p-value:6.38E-04; Z-score:1.19E+00

Methylation in Case

9.41E-01 (Median) Methylation in Control 9.21E-01 (Median)

Studied Phenotype

HIV infection[ ICD-11:1C62.Z]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon9

Methylation of SLC22A3 in HIV infection [ 10 ]

Location

Body (cg23898998)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.04E+00 Statistic Test p-value:8.23E-04; Z-score:-8.32E-01

Methylation in Case

8.10E-01 (Median) Methylation in Control 8.44E-01 (Median)

Studied Phenotype

HIV infection[ ICD-11:1C62.Z]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon10

Methylation of SLC22A3 in HIV infection [ 10 ]

Location

Body (cg07349212)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:1.09E+00 Statistic Test p-value:1.27E-02; Z-score:4.39E-01

Methylation in Case

7.00E-02 (Median) Methylation in Control 6.43E-02 (Median)

Studied Phenotype

HIV infection[ ICD-11:1C62.Z]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon11

Methylation of SLC22A3 in HIV infection [ 10 ]

Location

Body (cg06295784)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:1.02E+00 Statistic Test p-value:1.88E-02; Z-score:4.69E-01

Methylation in Case

7.91E-01 (Median) Methylation in Control 7.73E-01 (Median)

Studied Phenotype

HIV infection[ ICD-11:1C62.Z]

Experimental Material

Patient tissue samples

  Lung adenocarcinoma

           5 Epigenetic Phenomena Related to This Phenotype Click to Show/Hide the Full List

  Epigenetic Phenomenon1

Methylation of SLC22A3 in lung adenocarcinoma [ 11 ]

Location

TSS1500 (cg22117918)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:1.49E+00 Statistic Test p-value:6.40E-03; Z-score:2.54E+00

Methylation in Case

3.18E-01 (Median) Methylation in Control 2.14E-01 (Median)

Studied Phenotype

Lung adenocarcinoma[ ICD-11:2C25.0]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon2

Methylation of SLC22A3 in lung adenocarcinoma [ 11 ]

Location

TSS1500 (cg07883823)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:1.39E+00 Statistic Test p-value:7.87E-03; Z-score:1.91E+00

Methylation in Case

3.37E-01 (Median) Methylation in Control 2.42E-01 (Median)

Studied Phenotype

Lung adenocarcinoma[ ICD-11:2C25.0]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon3

Methylation of SLC22A3 in lung adenocarcinoma [ 11 ]

Location

TSS200 (cg17364114)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:3.83E+00 Statistic Test p-value:4.07E-04; Z-score:7.16E+00

Methylation in Case

3.25E-01 (Median) Methylation in Control 8.50E-02 (Median)

Studied Phenotype

Lung adenocarcinoma[ ICD-11:2C25.0]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon4

Methylation of SLC22A3 in lung adenocarcinoma [ 11 ]

Location

1stExon (cg07237939)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:3.07E+00 Statistic Test p-value:1.25E-03; Z-score:6.50E+00

Methylation in Case

2.05E-01 (Median) Methylation in Control 6.68E-02 (Median)

Studied Phenotype

Lung adenocarcinoma[ ICD-11:2C25.0]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon5

Methylation of SLC22A3 in lung adenocarcinoma [ 11 ]

Location

Body (cg08303612)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:1.37E+00 Statistic Test p-value:1.66E-02; Z-score:2.49E+00

Methylation in Case

1.68E-01 (Median) Methylation in Control 1.23E-01 (Median)

Studied Phenotype

Lung adenocarcinoma[ ICD-11:2C25.0]

Experimental Material

Patient tissue samples

  Papillary thyroid cancer

           8 Epigenetic Phenomena Related to This Phenotype Click to Show/Hide the Full List

  Epigenetic Phenomenon1

Methylation of SLC22A3 in papillary thyroid cancer [ 12 ]

Location

TSS1500 (cg21110739)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.02E+00 Statistic Test p-value:2.00E-05; Z-score:-1.25E+00

Methylation in Case

8.76E-01 (Median) Methylation in Control 8.96E-01 (Median)

Studied Phenotype

Papillary thyroid cancer[ ICD-11:2D10.1]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon2

Methylation of SLC22A3 in papillary thyroid cancer [ 12 ]

Location

TSS1500 (cg22117918)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:1.09E+00 Statistic Test p-value:3.61E-04; Z-score:5.18E-01

Methylation in Case

1.90E-01 (Median) Methylation in Control 1.74E-01 (Median)

Studied Phenotype

Papillary thyroid cancer[ ICD-11:2D10.1]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon3

Methylation of SLC22A3 in papillary thyroid cancer [ 12 ]

Location

TSS1500 (cg07883823)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:1.10E+00 Statistic Test p-value:2.36E-03; Z-score:5.50E-01

Methylation in Case

2.21E-01 (Median) Methylation in Control 2.00E-01 (Median)

Studied Phenotype

Papillary thyroid cancer[ ICD-11:2D10.1]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon4

Methylation of SLC22A3 in papillary thyroid cancer [ 12 ]

Location

Body (cg04794858)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.02E+00 Statistic Test p-value:2.01E-04; Z-score:-7.11E-01

Methylation in Case

8.89E-01 (Median) Methylation in Control 9.04E-01 (Median)

Studied Phenotype

Papillary thyroid cancer[ ICD-11:2D10.1]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon5

Methylation of SLC22A3 in papillary thyroid cancer [ 12 ]

Location

Body (cg13280882)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.01E+00 Statistic Test p-value:6.45E-04; Z-score:-8.51E-01

Methylation in Case

9.40E-01 (Median) Methylation in Control 9.51E-01 (Median)

Studied Phenotype

Papillary thyroid cancer[ ICD-11:2D10.1]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon6

Methylation of SLC22A3 in papillary thyroid cancer [ 12 ]

Location

Body (cg15363979)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.01E+00 Statistic Test p-value:2.75E-03; Z-score:-4.56E-01

Methylation in Case

8.89E-01 (Median) Methylation in Control 8.95E-01 (Median)

Studied Phenotype

Papillary thyroid cancer[ ICD-11:2D10.1]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon7

Methylation of SLC22A3 in papillary thyroid cancer [ 12 ]

Location

Body (cg06295784)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.01E+00 Statistic Test p-value:1.39E-02; Z-score:-3.89E-01

Methylation in Case

8.43E-01 (Median) Methylation in Control 8.54E-01 (Median)

Studied Phenotype

Papillary thyroid cancer[ ICD-11:2D10.1]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon8

Methylation of SLC22A3 in papillary thyroid cancer [ 12 ]

Location

Body (cg18126027)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.02E+00 Statistic Test p-value:2.68E-02; Z-score:-8.29E-01

Methylation in Case

8.96E-01 (Median) Methylation in Control 9.15E-01 (Median)

Studied Phenotype

Papillary thyroid cancer[ ICD-11:2D10.1]

Experimental Material

Patient tissue samples

  Colon cancer

           6 Epigenetic Phenomena Related to This Phenotype Click to Show/Hide the Full List

  Epigenetic Phenomenon1

Methylation of SLC22A3 in colon adenocarcinoma [ 14 ]

Location

TSS200 (cg13028471)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.20E+00 Statistic Test p-value:3.50E-03; Z-score:-3.04E-01

Methylation in Case

6.58E-02 (Median) Methylation in Control 7.87E-02 (Median)

Studied Phenotype

Colon cancer[ ICD-11:2B90]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon2

Methylation of SLC22A3 in colon adenocarcinoma [ 14 ]

Location

Body (cg04186249)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.31E+00 Statistic Test p-value:1.73E-06; Z-score:-4.75E+00

Methylation in Case

5.55E-01 (Median) Methylation in Control 7.26E-01 (Median)

Studied Phenotype

Colon cancer[ ICD-11:2B90]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon3

Methylation of SLC22A3 in colon adenocarcinoma [ 14 ]

Location

Body (cg05275995)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.07E+00 Statistic Test p-value:1.97E-03; Z-score:-1.88E+00

Methylation in Case

7.43E-01 (Median) Methylation in Control 7.98E-01 (Median)

Studied Phenotype

Colon cancer[ ICD-11:2B90]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon4

Methylation of SLC22A3 in colon adenocarcinoma [ 14 ]

Location

Body (cg16523422)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.14E+00 Statistic Test p-value:2.60E-03; Z-score:-2.01E+00

Methylation in Case

6.40E-01 (Median) Methylation in Control 7.29E-01 (Median)

Studied Phenotype

Colon cancer[ ICD-11:2B90]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon5

Methylation of SLC22A3 in colon adenocarcinoma [ 14 ]

Location

Body (cg13071812)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.12E+00 Statistic Test p-value:3.57E-03; Z-score:-6.98E-01

Methylation in Case

1.49E-01 (Median) Methylation in Control 1.67E-01 (Median)

Studied Phenotype

Colon cancer[ ICD-11:2B90]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon6

Methylation of SLC22A3 in colon adenocarcinoma [ 14 ]

Location

3'UTR (cg20678043)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.29E+00 Statistic Test p-value:4.17E-05; Z-score:-3.56E+00

Methylation in Case

5.67E-01 (Median) Methylation in Control 7.30E-01 (Median)

Studied Phenotype

Colon cancer[ ICD-11:2B90]

Experimental Material

Patient tissue samples

  Atypical teratoid rhabdoid tumor

         12 Epigenetic Phenomena Related to This Phenotype Click to Show/Hide the Full List

  Epigenetic Phenomenon1

Methylation of SLC22A3 in atypical teratoid rhabdoid tumor [ 15 ]

Location

1stExon (cg07237939)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.42E+00 Statistic Test p-value:2.39E-21; Z-score:-3.90E+00

Methylation in Case

5.59E-01 (Median) Methylation in Control 7.93E-01 (Median)

Studied Phenotype

Atypical teratoid rhabdoid tumor[ ICD-11:2A00.1Y]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon2

Methylation of SLC22A3 in atypical teratoid rhabdoid tumor [ 15 ]

Location

Body (cg01923312)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.19E+00 Statistic Test p-value:1.03E-04; Z-score:-8.99E-01

Methylation in Case

6.58E-01 (Median) Methylation in Control 7.86E-01 (Median)

Studied Phenotype

Atypical teratoid rhabdoid tumor[ ICD-11:2A00.1Y]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon3

Methylation of SLC22A3 in atypical teratoid rhabdoid tumor [ 15 ]

Location

Body (cg02042585)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.07E+00 Statistic Test p-value:1.11E-04; Z-score:-9.25E-01

Methylation in Case

7.57E-01 (Median) Methylation in Control 8.11E-01 (Median)

Studied Phenotype

Atypical teratoid rhabdoid tumor[ ICD-11:2A00.1Y]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon4

Methylation of SLC22A3 in atypical teratoid rhabdoid tumor [ 15 ]

Location

Body (cg04794858)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:1.08E+00 Statistic Test p-value:9.54E-04; Z-score:7.88E-01

Methylation in Case

8.89E-01 (Median) Methylation in Control 8.20E-01 (Median)

Studied Phenotype

Atypical teratoid rhabdoid tumor[ ICD-11:2A00.1Y]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon5

Methylation of SLC22A3 in atypical teratoid rhabdoid tumor [ 15 ]

Location

Body (cg06295784)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:1.02E+00 Statistic Test p-value:2.27E-03; Z-score:6.78E-01

Methylation in Case

9.31E-01 (Median) Methylation in Control 9.09E-01 (Median)

Studied Phenotype

Atypical teratoid rhabdoid tumor[ ICD-11:2A00.1Y]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon6

Methylation of SLC22A3 in atypical teratoid rhabdoid tumor [ 15 ]

Location

Body (cg07349212)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.07E+00 Statistic Test p-value:3.84E-03; Z-score:-6.99E-01

Methylation in Case

7.37E-01 (Median) Methylation in Control 7.90E-01 (Median)

Studied Phenotype

Atypical teratoid rhabdoid tumor[ ICD-11:2A00.1Y]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon7

Methylation of SLC22A3 in atypical teratoid rhabdoid tumor [ 15 ]

Location

Body (cg08303612)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:1.17E+00 Statistic Test p-value:5.74E-03; Z-score:4.06E-01

Methylation in Case

1.43E-01 (Median) Methylation in Control 1.22E-01 (Median)

Studied Phenotype

Atypical teratoid rhabdoid tumor[ ICD-11:2A00.1Y]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon8

Methylation of SLC22A3 in atypical teratoid rhabdoid tumor [ 15 ]

Location

Body (cg09226986)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.01E+00 Statistic Test p-value:9.57E-03; Z-score:-4.48E-01

Methylation in Case

9.19E-01 (Median) Methylation in Control 9.27E-01 (Median)

Studied Phenotype

Atypical teratoid rhabdoid tumor[ ICD-11:2A00.1Y]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon9

Methylation of SLC22A3 in atypical teratoid rhabdoid tumor [ 15 ]

Location

Body (cg11696576)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.05E+00 Statistic Test p-value:2.46E-02; Z-score:-4.55E-01

Methylation in Case

7.03E-01 (Median) Methylation in Control 7.40E-01 (Median)

Studied Phenotype

Atypical teratoid rhabdoid tumor[ ICD-11:2A00.1Y]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon10

Methylation of SLC22A3 in atypical teratoid rhabdoid tumor [ 15 ]

Location

Body (cg13280882)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.00E+00 Statistic Test p-value:3.38E-02; Z-score:-1.20E-01

Methylation in Case

9.68E-01 (Median) Methylation in Control 9.72E-01 (Median)

Studied Phenotype

Atypical teratoid rhabdoid tumor[ ICD-11:2A00.1Y]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon11

Methylation of SLC22A3 in atypical teratoid rhabdoid tumor [ 15 ]

Location

Body (cg14255768)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:1.07E+00 Statistic Test p-value:4.39E-02; Z-score:5.86E-01

Methylation in Case

8.00E-01 (Median) Methylation in Control 7.47E-01 (Median)

Studied Phenotype

Atypical teratoid rhabdoid tumor[ ICD-11:2A00.1Y]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon12

Methylation of SLC22A3 in atypical teratoid rhabdoid tumor [ 15 ]

Location

3'UTR (cg00321824)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.28E+00 Statistic Test p-value:9.49E-16; Z-score:-2.45E+00

Methylation in Case

5.95E-01 (Median) Methylation in Control 7.62E-01 (Median)

Studied Phenotype

Atypical teratoid rhabdoid tumor[ ICD-11:2A00.1Y]

Experimental Material

Patient tissue samples

  Panic disorder

           2 Epigenetic Phenomena Related to This Phenotype Click to Show/Hide the Full List

  Epigenetic Phenomenon1

Methylation of SLC22A3 in panic disorder [ 16 ]

Location

Body (cg18126027)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:1.18E+00 Statistic Test p-value:6.78E-03; Z-score:7.21E-01

Methylation in Case

1.71E+00 (Median) Methylation in Control 1.45E+00 (Median)

Studied Phenotype

Panic disorder[ ICD-11:6B01]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon2

Methylation of SLC22A3 in panic disorder [ 16 ]

Location

Body (cg01923312)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-5.04E-01 Statistic Test p-value:2.49E-02; Z-score:-3.16E-01

Methylation in Case

-2.68E-01 (Median) Methylation in Control -1.35E-01 (Median)

Studied Phenotype

Panic disorder[ ICD-11:6B01]

Experimental Material

Patient tissue samples

  Systemic lupus erythematosus

           5 Epigenetic Phenomena Related to This Phenotype Click to Show/Hide the Full List

  Epigenetic Phenomenon1

Methylation of SLC22A3 in systemic lupus erythematosus [ 17 ]

Location

Body (cg14255768)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.01E+00 Statistic Test p-value:6.48E-04; Z-score:-1.39E-01

Methylation in Case

5.99E-01 (Median) Methylation in Control 6.07E-01 (Median)

Studied Phenotype

Systemic lupus erythematosus[ ICD-11:4A40.0]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon2

Methylation of SLC22A3 in systemic lupus erythematosus [ 17 ]

Location

Body (cg15363979)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.00E+00 Statistic Test p-value:2.56E-02; Z-score:-1.17E-01

Methylation in Case

9.10E-01 (Median) Methylation in Control 9.12E-01 (Median)

Studied Phenotype

Systemic lupus erythematosus[ ICD-11:4A40.0]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon3

Methylation of SLC22A3 in systemic lupus erythematosus [ 17 ]

Location

Body (cg04794858)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.01E+00 Statistic Test p-value:2.59E-02; Z-score:-2.29E-01

Methylation in Case

8.66E-01 (Median) Methylation in Control 8.75E-01 (Median)

Studied Phenotype

Systemic lupus erythematosus[ ICD-11:4A40.0]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon4

Methylation of SLC22A3 in systemic lupus erythematosus [ 17 ]

Location

Body (cg23898998)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:-1.01E+00 Statistic Test p-value:3.27E-02; Z-score:-1.47E-01

Methylation in Case

7.86E-01 (Median) Methylation in Control 7.95E-01 (Median)

Studied Phenotype

Systemic lupus erythematosus[ ICD-11:4A40.0]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon5

Methylation of SLC22A3 in systemic lupus erythematosus [ 17 ]

Location

Body (cg19149031)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change:1.00E+00 Statistic Test p-value:4.01E-02; Z-score:6.60E-02

Methylation in Case

8.69E-01 (Median) Methylation in Control 8.65E-01 (Median)

Studied Phenotype

Systemic lupus erythematosus[ ICD-11:4A40.0]

Experimental Material

Patient tissue samples

microRNA

  Coronary artery disease

           1 Epigenetic Phenomena Related to This Phenotype Click to Show/Hide the Full List

  Epigenetic Phenomenon1

miR-147a downregulates SLC22A3 expression in coronary artery disease [ 18 ]

Epigenetic Type

microRNA Experiment Method Luciferase reporter assay

Related Molecular Changes

Down regulation ofSLC22A3 Experiment Method RT-qPCR

miRNA Stemloop ID

miR-147a miRNA Mature ID Unclear

miRNA Target Type

Direct

Studied Phenotype

Coronary artery disease[ ICD-11:BA6Z]

Experimental Material

Multiple cell lines of human

Additional Notes

The rs3088442 G allele might suppress miR-147a binding to the 3'-UTR region of SLC22A3, resulting in altered SLC22A3 and LPA gene expression.

  Unclear Phenotype

         24 Epigenetic Phenomena Related to This Phenotype Click to Show/Hide the Full List

  Epigenetic Phenomenon1

miR-124 directly targets SLC22A3 [ 19 ]

Epigenetic Type

microRNA Experiment Method Microarray

miRNA Stemloop ID

miR-124 miRNA Mature ID miR-124-3p

miRNA Sequence

UAAGGCACGCGGUGAAUGCCAA

miRNA Target Type

Direct

Experimental Material

Human cervical cancer cell line (Hela)

  Epigenetic Phenomenon2

miR-1272 directly targets SLC22A3 [ 20 ]

Epigenetic Type

microRNA Experiment Method HITS-CLIP

miRNA Stemloop ID

miR-1272 miRNA Mature ID miR-1272

miRNA Sequence

GAUGAUGAUGGCAGCAAAUUCUGAAA

miRNA Target Type

Direct

Experimental Material

Multiple cell lines of human

  Epigenetic Phenomenon3

miR-130b directly targets SLC22A3 [ 20 ]

Epigenetic Type

microRNA Experiment Method HITS-CLIP

miRNA Stemloop ID

miR-130b miRNA Mature ID miR-130b-5p

miRNA Sequence

ACUCUUUCCCUGUUGCACUAC

miRNA Target Type

Direct

Experimental Material

Multiple cell lines of human

  Epigenetic Phenomenon4

miR-1322 directly targets SLC22A3 [ 20 ]

Epigenetic Type

microRNA Experiment Method HITS-CLIP

miRNA Stemloop ID

miR-1322 miRNA Mature ID miR-1322

miRNA Sequence

GAUGAUGCUGCUGAUGCUG

miRNA Target Type

Direct

Experimental Material

Multiple cell lines of human

  Epigenetic Phenomenon5

miR-147a directly targets SLC22A3 [ 18 ]

Epigenetic Type

microRNA Experiment Method Luciferase reporter assay

miRNA Stemloop ID

miR-147a miRNA Mature ID miR-147a

miRNA Sequence

GUGUGUGGAAAUGCUUCUGC

miRNA Target Type

Direct

Experimental Material

Multiple cell lines of human

  Epigenetic Phenomenon6

miR-148b directly targets SLC22A3 [ 21 ]

Epigenetic Type

microRNA Experiment Method Microarray

miRNA Stemloop ID

miR-148b miRNA Mature ID miR-148b-3p

miRNA Sequence

UCAGUGCAUCACAGAACUUUGU

miRNA Target Type

Direct

Experimental Material

Human cervical cancer cell line (Hela)

  Epigenetic Phenomenon7

miR-23a directly targets SLC22A3 [ 22 ]

Epigenetic Type

microRNA Experiment Method HITS-CLIP

miRNA Stemloop ID

miR-23a miRNA Mature ID miR-23a-5p

miRNA Sequence

GGGGUUCCUGGGGAUGGGAUUU

miRNA Target Type

Direct

Experimental Material

Multiple cell lines of human

  Epigenetic Phenomenon8

miR-23b directly targets SLC22A3 [ 22 ]

Epigenetic Type

microRNA Experiment Method HITS-CLIP

miRNA Stemloop ID

miR-23b miRNA Mature ID miR-23b-5p

miRNA Sequence

UGGGUUCCUGGCAUGCUGAUUU

miRNA Target Type

Direct

Experimental Material

Multiple cell lines of human

  Epigenetic Phenomenon9

miR-3940 directly targets SLC22A3 [ 22 ]

Epigenetic Type

microRNA Experiment Method HITS-CLIP

miRNA Stemloop ID

miR-3940 miRNA Mature ID miR-3940-5p

miRNA Sequence

GUGGGUUGGGGCGGGCUCUG

miRNA Target Type

Direct

Experimental Material

Multiple cell lines of human

  Epigenetic Phenomenon10

miR-4291 directly targets SLC22A3 [ 22 ]

Epigenetic Type

microRNA Experiment Method HITS-CLIP

miRNA Stemloop ID

miR-4291 miRNA Mature ID miR-4291

miRNA Sequence

UUCAGCAGGAACAGCU

miRNA Target Type

Direct

Experimental Material

Multiple cell lines of human

  Epigenetic Phenomenon11

miR-4330 directly targets SLC22A3 [ 20 ]

Epigenetic Type

microRNA Experiment Method HITS-CLIP

miRNA Stemloop ID

miR-4330 miRNA Mature ID miR-4330

miRNA Sequence

CCUCAGAUCAGAGCCUUGC

miRNA Target Type

Direct

Experimental Material

Multiple cell lines of human

  Epigenetic Phenomenon12

miR-4494 directly targets SLC22A3 [ 20 ]

Epigenetic Type

microRNA Experiment Method HITS-CLIP

miRNA Stemloop ID

miR-4494 miRNA Mature ID miR-4494

miRNA Sequence

CCAGACUGUGGCUGACCAGAGG

miRNA Target Type

Direct

Experimental Material

Multiple cell lines of human

  Epigenetic Phenomenon13

miR-4507 directly targets SLC22A3 [ 22 ]

Epigenetic Type

microRNA Experiment Method HITS-CLIP

miRNA Stemloop ID

miR-4507 miRNA Mature ID miR-4507

miRNA Sequence

CUGGGUUGGGCUGGGCUGGG

miRNA Target Type

Direct

Experimental Material

Multiple cell lines of human

  Epigenetic Phenomenon14

miR-452 directly targets SLC22A3 [ 22 ]

Epigenetic Type

microRNA Experiment Method HITS-CLIP

miRNA Stemloop ID

miR-452 miRNA Mature ID miR-452-3p

miRNA Sequence

CUCAUCUGCAAAGAAGUAAGUG

miRNA Target Type

Direct

Experimental Material

Multiple cell lines of human

  Epigenetic Phenomenon15

miR-4639 directly targets SLC22A3 [ 20 ]

Epigenetic Type

microRNA Experiment Method HITS-CLIP

miRNA Stemloop ID

miR-4639 miRNA Mature ID miR-4639-3p

miRNA Sequence

UCACUCUCACCUUGCUUUGC

miRNA Target Type

Direct

Experimental Material

Multiple cell lines of human

  Epigenetic Phenomenon16

miR-4753 directly targets SLC22A3 [ 20 ]

Epigenetic Type

microRNA Experiment Method HITS-CLIP

miRNA Stemloop ID

miR-4753 miRNA Mature ID miR-4753-3p

miRNA Sequence

UUCUCUUUCUUUAGCCUUGUGU

miRNA Target Type

Direct

Experimental Material

Multiple cell lines of human

  Epigenetic Phenomenon17

miR-499b directly targets SLC22A3 [ 20 ]

Epigenetic Type

microRNA Experiment Method HITS-CLIP

miRNA Stemloop ID

miR-499b miRNA Mature ID miR-499b-5p

miRNA Sequence

ACAGACUUGCUGUGAUGUUCA

miRNA Target Type

Direct

Experimental Material

Multiple cell lines of human

  Epigenetic Phenomenon18

miR-515 directly targets SLC22A3 [ 20 ]

Epigenetic Type

microRNA Experiment Method HITS-CLIP

miRNA Stemloop ID

miR-515 miRNA Mature ID miR-515-5p

miRNA Sequence

UUCUCCAAAAGAAAGCACUUUCUG

miRNA Target Type

Direct

Experimental Material

Multiple cell lines of human

  Epigenetic Phenomenon19

miR-519d directly targets SLC22A3 [ 20 ]

Epigenetic Type

microRNA Experiment Method HITS-CLIP

miRNA Stemloop ID

miR-519d miRNA Mature ID miR-519d-5p

miRNA Sequence

CCUCCAAAGGGAAGCGCUUUCUGUU

miRNA Target Type

Direct

Experimental Material

Multiple cell lines of human

  Epigenetic Phenomenon20

miR-519e directly targets SLC22A3 [ 20 ]

Epigenetic Type

microRNA Experiment Method HITS-CLIP

miRNA Stemloop ID

miR-519e miRNA Mature ID miR-519e-5p

miRNA Sequence

UUCUCCAAAAGGGAGCACUUUC

miRNA Target Type

Direct

Experimental Material

Multiple cell lines of human

  Epigenetic Phenomenon21

miR-545 directly targets SLC22A3 [ 22 ]

Epigenetic Type

microRNA Experiment Method HITS-CLIP

miRNA Stemloop ID

miR-545 miRNA Mature ID miR-545-3p

miRNA Sequence

UCAGCAAACAUUUAUUGUGUGC

miRNA Target Type

Direct

Experimental Material

Multiple cell lines of human

  Epigenetic Phenomenon22

miR-5695 directly targets SLC22A3 [ 20 ]

Epigenetic Type

microRNA Experiment Method HITS-CLIP

miRNA Stemloop ID

miR-5695 miRNA Mature ID miR-5695

miRNA Sequence

ACUCCAAGAAGAAUCUAGACAG

miRNA Target Type

Direct

Experimental Material

Multiple cell lines of human

  Epigenetic Phenomenon23

miR-6839 directly targets SLC22A3 [ 22 ]

Epigenetic Type

microRNA Experiment Method HITS-CLIP

miRNA Stemloop ID

miR-6839 miRNA Mature ID miR-6839-3p

miRNA Sequence

UUGGGUUUUCUCUUCAAUCCAG

miRNA Target Type

Direct

Experimental Material

Multiple cell lines of human

  Epigenetic Phenomenon24

miR-9 directly targets SLC22A3 [ 21 ]

Epigenetic Type

microRNA Experiment Method Microarray

miRNA Stemloop ID

miR-9 miRNA Mature ID miR-9-5p

miRNA Sequence

UCUUUGGUUAUCUAGCUGUAUGA

miRNA Target Type

Direct

Experimental Material

Human cervical cancer cell line (Hela)
References
1 Genetic and epigenetic regulation of the organic cation transporter 3, SLC22A3. Pharmacogenomics J. 2013 Apr;13(2):110-20.
2 Diabetes medication associates with DNA methylation of metformin transporter genes in the human liver. Clin Epigenetics. 2017 Sep 21;9:102.
3 Epigenetic alterations of a novel antioxidant gene SLC22A3 predispose susceptible individuals to increased risk of esophageal cancer. Int J Biol Sci. 2018 Sep 7;14(12):1658-1668.
4 Genome-wide DNA methylation patterns in pancreatic ductal adenocarcinoma reveal epigenetic deregulation of SLIT-ROBO, ITGA2 and MET signaling. Int J Cancer. 2014 Sep 1;135(5):1110-8.
5 DNA Methylation Dynamics in Urological Tumors.
6 Genome-wide Scan for Methylation Profiles in Breast Cancer
7 A CpG-methylation-based assay to predict survival in clear cell renal cell carcinoma. Nat Commun. 2015 Oct 30;6:8699.
8 Differences in DNA methylation signatures reveal multiple pathways of progression from adenoma to colorectal cancer. Gastroenterology. 2014 Aug;147(2):418-29.e8.
9 Exploring genome-wide DNA methylation profiles altered in hepatocellular carcinoma using Infinium HumanMethylation 450 BeadChips. Epigenetics. 2013 Jan;8(1):34-43.
10 HIV-1 Infection Accelerates Age According to the Epigenetic Clock. J Infect Dis. 2015 Nov 15;212(10):1563-73.
11 DNA methylation analysis of lung adenocarcinoma and adjacent non-tumor tissues
12 Prognostic Classifier Based on Genome-Wide DNA Methylation Profiling in Well-Differentiated Thyroid Tumors. J Clin Endocrinol Metab. 2017 Nov 1;102(11):4089-4099.
13 Reducing the risk of false discovery enabling identification of biologically significant genome-wide methylation status using the HumanMethylation450 array. BMC Genomics. 2014 Jan 22;15:51.
14 Genome-scale analysis of DNA methylation in colorectal cancer using Infinium HumanMethylation450 BeadChips. Epigenetics. 2013 Sep;8(9):921-34.
15 Atypical Teratoid/Rhabdoid Tumors Are Comprised of Three Epigenetic Subgroups with Distinct Enhancer Landscapes. Cancer Cell. 2016 Mar 14;29(3):379-393.
16 DNA Methylation signatures in panic disorder. Transl Psychiatry. 2017 Dec 18;7(12):1287.
17 Genome-wide DNA methylation analysis of systemic lupus erythematosus reveals persistent hypomethylation of interferon genes and compositional changes to CD4+ T-cell populations. PLoS Genet. 2013;9(8):e1003678.
18 Functional Variant in the SLC22A3-LPAL2-LPA Gene Cluster Contributes to the Severity of Coronary Artery Disease. Arterioscler Thromb Vasc Biol. 2016 Sep;36(9):1989-96.
19 The impact of microRNAs on protein output. Nature. 2008 Sep 4;455(7209):64-71.
20 Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps. Nature. 2009 Jul 23;460(7254):479-86.
21 MicroRNA targeting specificity in mammals: determinants beyond seed pairing. Mol Cell. 2007 Jul 6;27(1):91-105.
22 Remodeling of Ago2-mRNA interactions upon cellular stress reflects miRNA complementarity and correlates with altered translation rates. Genes Dev. 2013 Jul 15;27(14):1624-32.

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